docs(config): document unmanaged TOML table retention
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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@@ -37,4 +37,4 @@ The agent chooses the smallest sufficient checks based on behavior, affected cal
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Delegation and long-running state use the shared orchestration rule, loaded on demand as a Codex rule or Claude skill. The coordinator owns decisions and routes concise evidence-based handoffs. Review and execution verification have separate responsibilities; see [Agents](agents.md).
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Rebuild packages after changes to shared definitions or adapters. Generated defaults reach a user's configuration only through installation or update. Updates merge Codex's setup-owned root keys and table fields while retaining other root keys, extra fields in managed tables, plugin and marketplace tables, and unowned array tables. Other standalone tables may be dropped. Claude settings retain unrelated keys and hooks. See [the README](../README.md) for overwrite and backup behavior.
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Rebuild packages after changes to shared definitions or adapters. Generated defaults reach a user's configuration only through installation or update. Updates merge Codex's setup-owned root keys and table fields while retaining other root keys, extra fields in managed tables, plugin and marketplace tables, other unmanaged tables such as `mcp_servers` and `model_providers`, and unowned array tables. Claude settings retain unrelated keys and hooks. See [the README](../README.md) for overwrite and backup behavior.
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